Hi,
1. first of all, you know internal CF is always primary media and USB is secondary media in SRX low-end firewalls
2. Now, if SRX is installed with dual partition scheme (9.6 or later) then we have active and backup copies of JunOS. These can be viewed as
user@host> show system storage partitions
Boot Media: internal (da0)
Active Partition: da0s2a
Backup Partition: da0s1a
Currently booted from: active (da0s2a)
Partitions Information:
Partition Size Mountpoint
s1a 293M altroot
s2a 293M /
s3e 24M /config
s3f 342M /var
s4a 30M recovery
here on disk 0 (da0), slice-1 and slice-2 have backup and active JunOS copies, respectively. Notably, /config and /var are mounted on different slices. It indicates configuraion files are save separately from backup and active JunOS copies.
While taking snapshots, all slices /, /altroot, /config, /var and recovery slices are copied to media (e.g usb)
root@TestBox> request system snapshot media usb partition
Clearing current label...
Partitioning usb media (/dev/da1) ...
Partitions on snapshot:
Partition Mountpoint Size Snapshot argument
s1a / 1.2G none
s2a /altroot 1.2G none
s3e /config 94M none
s3f /var 1.1G none
s4a recovery 131M none
Copying '/dev/da0s1a' to '/dev/da1s1a' .. (this may take a few minutes)
Copying '/dev/da0s2a' to '/dev/da1s2a' .. (this may take a few minutes)
Copying '/dev/da0s3e' to '/dev/da1s3e' .. (this may take a few minutes)
Copying '/dev/da0s3f' to '/dev/da1s3f' .. (this may take a few minutes)
Copying '/dev/da0s4a' to '/dev/da1s4a' .. (this may take a few minutes)
The following filesystems were archived: / /altroot /config /var recovery
read for details
http://www.juniper.net/techpubs/software/junos-security/junos-security10.2/junos-security-admin-guide/jd0e34829.html
regards