Generally backup operations push lots of data at the same time. So it is best to avoid bandwidth restrictive devices like firewalls in this traffic path.
For the ISG2000 your bandwidth processing limit is between 2-4 gig according to the spec sheet. In addition, lags can only put a single stream on a single link, so each flow would still be limited to the gig line.
http://www.juniper.net/us/en/local/pdf/datasheets/1100036-en.pdf
In a multizone datacenter, I would create a separate layer 2 only vlan for the backup traffic. Then place a second nic card into the servers that attach just to the backup network. Have the backups then run separate from the production traffic. this way you are on line rate capable switching for the entire path.