Ok, so I figured it out. If anyone ever has this problem in the future, follow these steps to correct:
1) Load the latest JLoader for EX3200, you can find it here:
https://download.juniper.net/software/junos/specials/jloader/jloader-ex-3242-11.3I20110326_0802_hmerge-signed.tgz
2) Load the JUNOS Image, in my case it was 11.4R4.4, you can find it here:
http://www.juniper.net/support/downloads/?p=ex3200#sw
3) Do the whole requesy system add validate /var/tmp/ procedure, in my case it was as follows:
root@ex3200> request system software add validate /var/tmp/jloader-ex-3242-11.3I20110326_0802_hmerge-signed.tgz
Verified jloader-ex-3242-11.3I20110326_0802_hmerge.tgz signed by PackageDevelopment_11_3_0
Pre-checking requirements for jloader-ex-3242...
Auto-deleting old jloader-ex-3242...
Unmounted /packages/mnt/jloader-ex-3242-11.3I20110326_0802_hmerge ...
Adding jloader-ex-3242...
Installation in progress, please wait...
Mounted jloader-ex-3242 package on /dev/md12...
Verified manifest signed by PackageDevelopment_11_3_0
Verified jloader-ex-3242-11.3I20110326_0802_hmerge signed by PackageDevelopment_11_3_0
Registering jloader-ex-3242 as unsupported
##############################
################################################################
Installation finished successfully.
Please reboot to activate the package
Saving package file in /var/sw/pkg/jloader-ex-3242-11.3I20110326_0802_hmerge-signed.tgz ...
Saving state for rollback ...
root@ex3200>
root@ex3200> request system software add validate /var/tmp/jinstall-ex-3200-11.4R4.4-domestic-signed.tgz
WARNING: A reboot is required to install the software
WARNING: Use the 'request system reboot' command immediately
root@ex3200>
root@ex3200> request system reboot
Reboot the system ? [yes,no] (no) yes
Shutdown NOW!
[pid 1453]
root@ex3200>
*** FINAL System shutdown message from root@ex3200 ***
System going down IMMEDIATELY
login as: root
root@ex3200's password:
--- JUNOS 11.4R4.4 built 2012-06-28 08:35:13 UTC
root@ex3200> show system alarms
No alarms currently active
root@ex3200>
Problem fixed.