Hi DimHelmet,
Juniper Firewall don t support the mixed mode L2 and L3 on SSG550. So you have to choose L2 or L3.
To put your device in a full transparent mode , you have to set every interface in a L2 Zone ( Zone that start with V1-... ) or in the null zone.
In your case ( if you realy need translation and routing), you should work in a full L3 mode , set up your servers with private IP adress and use destination adresse translation ( with MIP ) in order to simulate the same kind of config than the sonicwall.